Fixed to comile under ubuntu and bumped library version.

Makefile.am

 AUTOMAKE_OPTIONS = foreign
 EXTRA_DIST = include src/cpp/CLHelper.h src/cpp/classtools.h src/cpp/invoke/JavaArgs.h src/cpp/invoke/OpenCLMem.h src/cpp/invoke/OpenCLKernel.h src/cpp/invoke/OpenCLJNI.h src/cpp/invoke/OpenCLArgDescriptor.h src/cpp/invoke/OpenCLProgram.h src/cpp/CLException.h src/cpp/JNIHelper.h src/cpp/Common.h src/cpp/runKernel/KernelArg.h src/cpp/runKernel/Range.h src/cpp/runKernel/ProfileInfo.h src/cpp/runKernel/AparapiBuffer.h src/cpp/runKernel/Config.h src/cpp/runKernel/Aparapi.h src/cpp/runKernel/ArrayBuffer.h src/cpp/runKernel/JNIContext.h src/cpp/runKernel/List.h
 lib_LTLIBRARIES = libaparapi.la
-libaparapi_la_LDFLAGS = -lOpenCL -version-info 3:0:2
-libaparapi_la_CPPFLAGS = -Iinclude -I/opt/AMDAPP/SDK/include -Isrc/cpp -Isrc/cpp/runKernel -Isrc/cpp/invoke -I/usr/lib/jvm/java-8-openjdk/jre/../include -I/usr/lib/jvm/java-8-openjdk/jre/../include/linux -DCL_USE_DEPRECATED_OPENCL_1_1_APIS
+libaparapi_la_LDFLAGS = -lOpenCL -version-info 3:1:2
+libaparapi_la_CPPFLAGS = -Iinclude -I/opt/AMDAPP/SDK/include -Isrc/cpp -Isrc/cpp/runKernel -Isrc/cpp/invoke -I/usr/lib/jvm/java-8-openjdk/include -I/usr/lib/jvm/java-8-openjdk/include/linux -I/usr/lib/jvm/java-8-openjdk-amd64/include -I/usr/lib/jvm/java-8-openjdk-amd64/include/linux -I/usr/lib/jvm/java-8-oracle/include -I/usr/lib/jvm/java-8-oracle/include/linux -DCL_USE_DEPRECATED_OPENCL_1_1_APIS
 libaparapi_la_SOURCES = src/cpp/runKernel/Aparapi.cpp src/cpp/runKernel/ArrayBuffer.cpp src/cpp/runKernel/AparapiBuffer.cpp src/cpp/runKernel/Config.cpp src/cpp/runKernel/JNIContext.cpp src/cpp/runKernel/KernelArg.cpp src/cpp/runKernel/ProfileInfo.cpp src/cpp/runKernel/Range.cpp src/cpp/invoke/OpenCLJNI.cpp src/cpp/invoke/OpenCLArgDescriptor.cpp src/cpp/invoke/OpenCLMem.cpp src/cpp/CLHelper.cpp src/cpp/classtools.cpp src/cpp/JNIHelper.cpp src/cpp/agent.cpp
 all-local:

prepare.sh

 #!/bin/sh
 mkdir include
-(cd java && mvn clean package)
+(cd java && mvn clean package -DskipTests=true)
 javah -jni -classpath ./java/target/classes -d include -force com.aparapi.internal.jni.ConfigJNI com.aparapi.internal.jni.KernelArgJNI com.aparapi.internal.jni.KernelRunnerJNI com.aparapi.internal.jni.OpenCLJNI com.aparapi.internal.jni.RangeJNI com.aparapi.Kernel com.aparapi.Range com.aparapi.Config com.aparapi.device.Device com.aparapi.device.OpenCLDevice com.aparapi.internal.kernel.KernelRunner com.aparapi.internal.opencl.OpenCLArgDescriptor com.aparapi.internal.opencl.OpenCLMem