From f0ce87ae266d1ee19333474a3b35a455fb86c610 Mon Sep 17 00:00:00 2001 From: Russell Jarvis <rjjarvis@asu.edu> Date: Fri, 17 Apr 2020 20:45:01 +1000 Subject: [PATCH] Update README.md --- README.md | 25 ++----------------------- 1 file changed, 2 insertions(+), 23 deletions(-) diff --git a/README.md b/README.md index 29c5c8d..b9dbac9 100644 --- a/README.md +++ b/README.md @@ -21,30 +21,9 @@ docker run -it nuopt /bin/bash # Advantages * Appeals to interest in AP shape, electrophysiology and Rheobase current injection value. -* -* Relatively fast, but with little administrative overhead. Optionally no C/NEURON building required. -<img src="docs/numba.png" width="200" height="150" /> <img src="docs/dask_logo.png" width="175" height="125" /> <img src="docs/deap.png" width="200" height="150" /> - +* Relatively fast, but with little administrative overhead. * Feature extraction routines: AllenSDK, Druckman, Elephant. -* Simulator Backends: brian2, Allen-GLIF, NEURON, PyNN - -``` BASH -docker pull russelljarvis/efel_allen_dm -docker run russelljarvis/efel_allen_dm neuronunit/examples/use_edt.py -``` - -# Optimization specific: - - Assumptions, the environment for running this notebook was arrived at by building a dedicated docker file. - - https://cloud.docker.com/repository/registry-1.docker.io/russelljarvis/nuo - or more recently: - https://cloud.docker.com/u/russelljarvis/repository/docker/russelljarvis/network_unit_opt - You can run use dockerhub to get the appropriate file, and launch this notebook using Kitematic. - -# Import libraries -To keep the standard running version of minimal and memory efficient, not all available packages are loaded by default. In the cell below I import a mixture common python modules, and custom developed modules associated with NeuronUnit (NU) development -#!pip install dask distributed seaborn +* Simulator Backends: Julia #!bash after_install.sh -- GitLab