From 52611d119ffe0d66f1bee7ceb9e5ae0b24b17b33 Mon Sep 17 00:00:00 2001 From: Russell Jarvis <rjjarvis@asu.edu> Date: Fri, 17 Apr 2020 20:43:49 +1000 Subject: [PATCH] Update README.md --- README.md | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index d1f712b..29c5c8d 100644 --- a/README.md +++ b/README.md @@ -8,10 +8,13 @@ This project glues together four repositories with the in order to optimise spik # Installation: ``` -sudo pip install neuronunit-opt==0.1 +git clone https://github.com/russelljjarvis/NeuronUnitOpt.jl +cd NeuronUnitOpt.jl +docker build -t nuopt . +docker run -it nuopt /bin/bash ``` # Description -* A very Julia+Python model-data optimization toolchain derived from ***neuronunit*** and tightly interfaced with other community supported modules, levarging standard workflows in: feature extraction, data scraping and model simulation. +* A Julia+Python model-data optimization toolchain derived from ***neuronunit*** and tightly interfaced with other community supported modules, levarging standard workflows in: feature extraction, data scraping and model simulation. * A collection of compact, parsimonious biological neuronal models, implemented in community supported python modules and tightly integrated into a fast data driven muliti-objective optimization routine (deap, numba, dask etc). * Neo, elephant, interoperability ships with the most minimal install. A wide range of feature extraction, data source, and interfaces and simulator backend support: NeuroML-DB, NeurML, Allen-SDK, PyNN and NEURON are provided with an easy to use [Docker container](). A wide range of interfaces and simulator backend support: Allen-SDK, PyNN and NEURON are provided with an [easy to use Docker container](https://github.com/russelljjarvis/docker-stacks-returned/blob/scidash/efel_dm/Dockerfile). -- GitLab