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Change-Id: Iaf08bf521ba753dc044248489b21e55961be3556

Issue: DANN-34
Change-Id: I19661412e3eadc955bb9bdca3322a8652f6c2e99

Conflicts:
	pom.xml

Issue: DANN-19
Change-Id: Iaaa85a0397b650abe89654987d99239f5df97d5a

Updated snaptshot to 2.2-SNAPSHOT

Change-Id: I18d529f31b63ebc17955eedefb13c3883f046f81

Change-Id: I6be8a70507ae84ffbffd2f8bdbd1465dc642ab23

Change-Id: I05d54c1ba12df671e924cd469e4ecc9e8d17499c

Change-Id: Ib6574fdfaa9b09ce311990eff5dc8b5fce760aa2

Change-Id: I45cd6f3ca8dbb6ed38078d3643a80a2c46497932

Change-Id: Ib8b35e032dcac58bb9b9450d3c8927544365afde

Change-Id: I66ad71e280fc7404303aa1b4e260664e5b1c4b9e

Change-Id: I6f588a22fe17bd12ccc32a18cc51c0be8d02193c

Fixed up the rather outdated pom.xml file. It had the wrong format for the SCM links, and the plugins were outdated, especially for maven 3.0. The site target in maven should now work as well.

copied the developer connection info in pom.xml from the root project to this one. There was incorrect reporting of this information by default

Updated the pom.xml file to use the correct group name, point to the correct servers, and include the dependencies repo. Mantis: Fixes #2 Fixes #3 Fixes #4

Fixed pom.xml to point to the new repo server locations. Also added the dependency repo so it can pull in freehep.

* fix typos in comments
* resolve some TODOs
* remove some comments on @Override methods, which are 1:1 copies
* add some (technically optional) curly braces

* make use of better typing (solves some TODOs)
* correct comment spelling errors and formatting

Fixed a bug in the Markov Random Field's joint probability function causing it to calculate incorrect results.